PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 128aa    MW: 14597.9 Da    PI: 10.4798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000642749123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_016447024.1 27 FECKTCNRQFSSFQALGGHRASH 49
                    89**********99999998887 PP

2zf-C2H210.80.00157395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cg  F+    L  H+r+H
  XP_016447024.1 73 HECSICGLEFPIGQALGGHMRRH 95
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.84E-92595No hitNo description
PfamPF139121.7E-122651IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2012754IPR007087Zinc finger, C2H2
SMARTSM003550.22749IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
PfamPF139128.2E-117297IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6637395IPR007087Zinc finger, C2H2
SMARTSM003550.277395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MANYLMLLSR QENHNFETIN NSPSRVFECK TCNRQFSSFQ ALGGHRASHK KTRLMGELNF  60
NQLPTSPPKP KTHECSICGL EFPIGQALGG HMRRHRAMLN ENIQVHVVNK SKSPRVLCLD  120
LNLTPRMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0066012e-94AB006601.1 Petunia x hybrida mRNA for ZPT2-14, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447024.18e-92PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424105e-31ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLM1C6228e-71M1C622_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000605232e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-34C2H2 family protein